Thanks Sayontan,
I ended up just overwriting my theme files with a backup. After that I was still having issues with one page and one category. I removed them and re-added them to the menus and now everything seems to be working fine.... now if only I could figure out how to stop getting {garbage} link injection spam

. I know this isn't the place for help with that though. Thanks for everything, you have the best theme and support out there!
-Shawna